DisGeNET - a database of gene-disease associations

List of shared variants

Precursor Cell Lymphoblastic Leukemia Lymphoma, C1961102

Disease: Childhood Acute Lymphoblastic Leukemia

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs16754	WT1	0.732	0.240	11	32396399	synonymous variant	T/C	snv	0.24; 4.0E-06	0.17	15
rs1142345	TPMT	0.776	0.280	6	18130687	missense variant	T/C;G	snv	3.7E-02		9
rs4880	SOD2	0.500	0.840	6	159692840	missense variant	A/G	snv	0.48	0.47	131
rs775144154	SLC19A1	0.627	0.600	21	45531904	missense variant	C/A;T	snv	9.7E-06; 1.4E-05		38
rs397507520	PTPN11	0.658	0.520	12	112453279	missense variant	G/C;T	snv			39
rs7088318	PIP4K2A	0.851	0.120	10	22564019	intron variant	C/A	snv		0.55	4
rs116855232	NUDT15	0.742	0.400	13	48045719	missense variant	C/T	snv	2.8E-02	1.1E-02	12
rs56149945	NR3C1	0.595	0.680	5	143399752	missense variant	T/A;C	snv	2.0E-02		49
rs6021191	NFATC2	0.851	0.120	20	51419700	intron variant	A/T	snv		4.9E-02	5
rs61754966	NBN	0.701	0.280	8	89978293	missense variant	T/C;G	snv	1.2E-03		23
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs4938723	MIR34C ; BTG4 ; MIR34B ; LOC728196	0.574	0.680	11	111511840	intron variant	T/C	snv		0.32	60
rs755622	MIF-AS1 ; MIF	0.611	0.720	22	23894205	intron variant	G/C	snv		0.26	44
rs1800562	LOC108783645 ; HFE	0.435	0.880	6	26092913	missense variant	G/A	snv	3.3E-02	3.8E-02	262
rs924607	LOC105374608 ; LOC100996325	0.851	0.120	5	609978	intron variant	C/T	snv		0.32	7
rs153109	IL27	0.623	0.600	16	28507775	intron variant	T/C	snv		0.43	37
rs17855750	IL27	0.695	0.480	16	28503907	missense variant	A/C;T	snv	6.4E-02; 4.0E-06		21
rs11978267	IKZF1	0.763	0.240	7	50398606	intron variant	A/G	snv		0.25	9
rs4132601	IKZF1	0.763	0.240	7	50402906	3 prime UTR variant	T/G	snv		0.25	9
rs6964969	IKZF1	0.851	0.120	7	50405553	downstream gene variant	A/G	snv		0.23	4
rs1695	GSTP1	0.457	0.880	11	67585218	missense variant	A/G	snv	0.34	0.36	188
rs3824662	GATA3	0.752	0.320	10	8062245	intron variant	C/A;T	snv			11
rs1801265	DPYD	0.763	0.280	1	97883329	missense variant	A/G	snv		0.28	13
rs2239633	CEBPE	0.742	0.240	14	23119848	upstream gene variant	G/A	snv		0.38	12